Annotation information from Pvirgatum_516_v5.1.annotation_info

A dataset containing the v5.1 annotation information for Panicum virgatum. The variables are as follows:

data(anno_info)

Format

A data frame with 80278 rows and 16 variables.

pacID ID of the Panicum virgatum gene from the annotation file.
locusName The gene name from Panicum virgatum. Only distinct locus names are included in this dataset.
transcriptName The transcript name from P. virgatum. Only the first transcript variant is included in this dataset.
peptideName The protein name for the variant. Only the first protein variant is included in this dataset.
Pfam
Panther Panther categories associated with this locus.
KOG assignments from the euKaryotic Orthologous Groups (KOG) database
ec EC numbers in Enzyme Nomenclature.
KO KEGG Orthology (KO) numbers associated with this locusName.
GO Gene ontology entries associated with this locusName.
Best-hit-arabi-name Best Arabidopsis thaliana homolog locus name.
arabi-symbol Best A. thaliana homolog gene name.
arabi-defline Best A. thaliana homolog gene annotation.
Best-hit-rice-name Best rice homolog locus name.
rice-symbol Best rice homolog gene name.
rice-defline Best rice homolog gene annotation.