From a mash result, get effects that are significant in at least one condition.

From a mash result, get effects that are significant in at least one condition.

From a mash result, get effects that are significant in at least one condition

get_significant_results(
  m,
  thresh = 0.05,
  conditions = NULL,
  sig_fn = ashr::get_lfsr
)

get_significant_results(
  m,
  thresh = 0.05,
  conditions = NULL,
  sig_fn = ashr::get_lfsr
)

Arguments

m

the mash result (from joint or 1by1 analysis)

thresh

indicates the threshold below which to call signals significant

conditions

which conditions to include in check (default to all)

sig_fn

the significance function used to extract significance from mash object; eg could be ashr::get_lfsr or ashr::get_lfdr. (Small values must indicate significant.)

Value

a vector containing the indices of the significant effects, by order of most significant to least a vector containing the indices of the significant effects, by order of most significant to least