gff_gene.RdA dataset containing the gene information in GFF3 format. The variables are as follows:
data(gff_gene)A data frame with 1236881 rows and 9 variables
seqid. name of the chromosome or scaffold; here, of Panicum virgatum.
source. name of the program that generated this feature.
type. type of feature. Term or accession from the SOFA sequence ontology.
start. Start position of the feature, with sequence numbering starting at 1.
end. End position of the feature, with sequence numbering starting at 1.
score. A floating point value.
strand. defined as + (forward) or - (reverse).
phase. One of '0', '1' or '2'. '0' indicates that the first base of the feature is the first base of a codon, '1' that the second base is the first base of a codon, and so on.
attributes. A semicolon-separated list of tag-value pairs, providing additional information about each feature. Some of these tags are predefined, e.g. ID, Name, Alias, Parent.