Step One of bigsnp2mashr — pvdiv_top_effects_log10p • switchgrassGWAS

Step One of bigsnp2mashr

pvdiv_top_effects_log10p(path, gwas_rds, phenotype, numSNPs, markers)

Arguments

path: Path
gwas_rds: RDS file with gwas results
phenotype: Character vector. Single phenotype name
numSNPs: Integer. Number of top SNPs to choose.
markers: Marker CHR & POS for the GWAS you ran